Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008057.1 Kokia drynarioides strain JFW-HI SEQ_122713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4551
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1930 original size:31 final size:29

Alignment explanation


    Indices: 1863--1932  Score: 86
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1853 AAATTGAGAT

                                   *     
       1863 TTCATGTATAAAATTACACAAAATCAAAA
          1 TTCATGTATAAAATTACACAAAACCAAAA

                      *                 * *
       1892 TTCATGTATACAATTACACATCAAACCATAG
          1 TTCATGTATAAAATTACACA--AAACCAAAA

                      
       1923 TTCATGTATA
          1 TTCATGTATA

       1933 GCTTTGATAT


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  29   19  0.54
  31   16  0.46

ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31


Consensus pattern (29 bp):   
TTCATGTATAAAATTACACAAAACCAAAA

Found at i:2735 original size:33 final size:34

Alignment explanation


    Indices: 2669--2737  Score: 95
    Period size: 33  Copynumber: 2.1  Consensus size: 34

       2659 CTTGTTGGTT

                           * *          *     
       2669 TTACTTTTCAATATTCTTTTTTTAAAACTGGATC
          1 TTACTTTTCAATATTATATTTTTAAAACAGGATC

                                   *          
       2703 TTACTTTTCAATA-TATATTTTTCAAACAGGATC
          1 TTACTTTTCAATATTATATTTTTAAAACAGGATC

              
       2736 TT
          1 TT

       2738 TCGATTTTCT


Statistics
Matches: 31,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  33   18  0.58
  34   13  0.42

ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51


Consensus pattern (34 bp):   
TTACTTTTCAATATTATATTTTTAAAACAGGATC
Done.