Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008059.1 Kokia drynarioides strain JFW-HI SEQ_122715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5040
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:2532 original size:23 final size:23

Alignment explanation


    Indices: 2491--2534  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       2481 TGTAAAAAAT

                    * *   *        
       2491 TAAAAGTATATATTTAAAATTAA
          1 TAAAAGTAAACATTCAAAATTAA

                                 
       2514 TAAAAGTAAACATTCAAAATT
          1 TAAAAGTAAACATTCAAAATT

       2535 TTAACGTGTA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   18  1.00

ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34


Consensus pattern (23 bp):   
TAAAAGTAAACATTCAAAATTAA
Done.