Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000806.1 Kokia drynarioides strain JFW-HI SEQ_111884, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37


Found at i:1003 original size:24 final size:24

Alignment explanation


    Indices: 975--1030  Score: 58
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        965 GACTAATAAG

                 *                  
        975 AGTTTGACACAAACAAATAAACAT
          1 AGTTTAACACAAACAAATAAACAT

                   ***             *
        999 AGTTTAATTGAAACAAATAAACAG
          1 AGTTTAACACAAACAAATAAACAT

             *      
       1023 ACTTTAAC
          1 AGTTTAAC

       1031 TGAAAGATTA


Statistics
Matches: 25,  Mismatches: 7, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.52, C:0.14, G:0.09, T:0.25


Consensus pattern (24 bp):   
AGTTTAACACAAACAAATAAACAT

Found at i:1034 original size:24 final size:24

Alignment explanation


    Indices: 985--1035  Score: 75
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        975 AGTTTGACAC

                         * *     *  
        985 AAACAAATAAACATAGTTTAATTG
          1 AAACAAATAAACAGACTTTAACTG

                                    
       1009 AAACAAATAAACAGACTTTAACTG
          1 AAACAAATAAACAGACTTTAACTG

               
       1033 AAA
          1 AAA

       1036 GATTATTTCT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.57, C:0.12, G:0.08, T:0.24


Consensus pattern (24 bp):   
AAACAAATAAACAGACTTTAACTG
Done.