Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008062.1 Kokia drynarioides strain JFW-HI SEQ_122718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2711
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37


Found at i:1287 original size:18 final size:17

Alignment explanation


    Indices: 1264--1311  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 17

       1254 CATTTTGTTA

                           *  
       1264 TGGTTGCATTTGCTCTTG
          1 TGGTTGCATTTGCT-ATG

                              
       1282 TGGTTGCATCTTGCTATG
          1 TGGTTGCAT-TTGCTATG

               *        
       1300 TGGCTGCATTTG
          1 TGGTTGCATTTG

       1312 ATCAAGAAAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  17    3  0.11
  18   19  0.70
  19    5  0.19

ACGTcount: A:0.08, C:0.17, G:0.29, T:0.46


Consensus pattern (17 bp):   
TGGTTGCATTTGCTATG
Done.