Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008066.1 Kokia drynarioides strain JFW-HI SEQ_122722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10228
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.34

Warning! 166 characters in sequence are not A, C, G, or T


Found at i:2505 original size:4 final size:4

Alignment explanation


    Indices: 2496--2530  Score: 70
    Period size: 4  Copynumber: 8.8  Consensus size: 4

       2486 ACCTCAATTT

                                                       
       2496 CATA CATA CATA CATA CATA CATA CATA CATA CAT
          1 CATA CATA CATA CATA CATA CATA CATA CATA CAT

       2531 GTATTGTGAG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26


Consensus pattern (4 bp):   
CATA

Found at i:8112 original size:21 final size:24

Alignment explanation


    Indices: 8081--8133  Score: 67
    Period size: 21  Copynumber: 2.3  Consensus size: 24

       8071 TTTCGGGGTA

                *                   
       8081 ATAATCTTACA-TCAAC-AAAATT
          1 ATAAACTTACATTCAACTAAAATT

                                 *  
       8103 A-AAACTTACATTCAACTAAATTT
          1 ATAAACTTACATTCAACTAAAATT

                    
       8126 ATAAACTT
          1 ATAAACTT

       8134 GATAGGAAAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  21    8  0.31
  22    6  0.23
  23    6  0.23
  24    6  0.23

ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34


Consensus pattern (24 bp):   
ATAAACTTACATTCAACTAAAATT

Found at i:8123 original size:22 final size:23

Alignment explanation


    Indices: 8081--8133  Score: 65
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       8071 TTTCGGGGTA

                *                  
       8081 ATAATCTTACATCAACAAAA-TT
          1 ATAAACTTACATCAACAAAATTT

                             *      
       8103 A-AAACTTACATTCAACTAAATTT
          1 ATAAACTTACA-TCAACAAAATTT

                    
       8126 ATAAACTT
          1 ATAAACTT

       8134 GATAGGAAAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  21    8  0.31
  22    9  0.35
  23    3  0.12
  24    6  0.23

ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34


Consensus pattern (23 bp):   
ATAAACTTACATCAACAAAATTT

Found at i:8699 original size:3 final size:3

Alignment explanation


    Indices: 8691--8726  Score: 54
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       8681 AATGATATAA

                            * *                            
       8691 TCT TCT TCT TCT CCG TCT TCT TCT TCT TCT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

       8727 CTTGAAACTC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.36, G:0.03, T:0.61


Consensus pattern (3 bp):   
TCT

Done.