Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000807.1 Kokia drynarioides strain JFW-HI SEQ_111886, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2030
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32


Found at i:1199 original size:11 final size:12

Alignment explanation


    Indices: 1172--1203  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       1162 AAAAAGAAAA

                        
       1172 TAAAATCTAATT
          1 TAAAATCTAATT

                        
       1184 TAAAATCTAA-T
          1 TAAAATCTAATT

                      
       1195 TAAAA-CTAA
          1 TAAAATCTAA

       1204 ATCTACTCCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  10    4  0.20
  11    6  0.30
  12   10  0.50

ACGTcount: A:0.56, C:0.09, G:0.00, T:0.34


Consensus pattern (12 bp):   
TAAAATCTAATT
Done.