Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008070.1 Kokia drynarioides strain JFW-HI SEQ_122726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8123
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:1769 original size:12 final size:12

Alignment explanation


    Indices: 1752--1792  Score: 50
    Period size: 12  Copynumber: 3.4  Consensus size: 12

       1742 CAGGTTCTTT

                        
       1752 TTCTTCTTTCTC
          1 TTCTTCTTTCTC

                         
       1764 TTCTTCCTTTC-C
          1 TTCTT-CTTTCTC

                         
       1776 TTCTTC-TTCTTC
          1 TTCTTCTTTC-TC

                 
       1788 TTCTT
          1 TTCTT

       1793 GATCCTTCTC


Statistics
Matches: 26,  Mismatches: 0, Indels: 6
        0.81            0.00        0.19

Matches are distributed among these distances:
  10    3  0.12
  11    1  0.04
  12   17  0.65
  13    5  0.19

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (12 bp):   
TTCTTCTTTCTC
Done.