Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008073.1 Kokia drynarioides strain JFW-HI SEQ_122729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2325
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.33


Found at i:1226 original size:158 final size:157

Alignment explanation


    Indices: 917--1338  Score: 587
    Period size: 158  Copynumber: 2.7  Consensus size: 157

        907 GACCTGCTCA

                            **                     *                *        
        917 CTGTGGGTCGAGATGTGGGGCTACACGATGCTGCTCACACGAGCTGTGGAGAATCCGTAATAAAT
          1 CTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACATGAGCTGTGGAGAATCCATAATAAAT

                                        ***       **                         
        982 GTCA--ACCTTAGCCATTGGTAGGACATTTGAGACCAGTGCCCATATAACCTGTAATGCTCACAC
         66 G-CAGGACCTTAGCCA-TGGTAGGACATCCAAGACCAGCACCCATATAACCTGTAATGCTCACAC

            *    *   *                   
       1045 GAGCTGTGAGATGAGTCTGCTCACACGAG
        129 AAGCTATGAAATGAGTCTGCTCACACGAG

                                      *     *              **           **   
       1074 CTGTGGGTCGAGATGTTAGGCTACACAATGCTCCTCACATGAGCTGTATAGAATCCATAACCAAT
          1 CTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACATGAGCTGTGGAGAATCCATAATAAAT

                     *  *                                                    
       1139 GCAGGACCTCAGTCATCGGTAGGACATCCAAGACCAGCACCCATATAACCTGTAATGCTCACACA
         66 GCAGGACCTTAGCCAT-GGTAGGACATCCAAGACCAGCACCCATATAACCTGTAATGCTCACACA

                        *  *            
       1204 AGCTATGAAATGGGTTTGCTCACACGAG
        130 AGCTATGAAATGAGTCTGCTCACACGAG

            *         *                                                      
       1232 ATGTGGGTCGGGATGTTAGGCTACACGATGCTGCTCACATGAGCTGTGGAGAATCCATAATAAAT
          1 CTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACATGAGCTGTGGAGAATCCATAATAAAT

                                                      
       1297 GCAGGACCTTAGCCATGGTAGGACATCCAAGACCAGCACCCA
         66 GCAGGACCTTAGCCATGGTAGGACATCCAAGACCAGCACCCA

       1339 GAACTGTAAA


Statistics
Matches: 230,  Mismatches: 32, Indels: 6
        0.86            0.12        0.02

Matches are distributed among these distances:
 156    2  0.01
 157   83  0.36
 158  145  0.63

ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22


Consensus pattern (157 bp):   
CTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACATGAGCTGTGGAGAATCCATAATAAAT
GCAGGACCTTAGCCATGGTAGGACATCCAAGACCAGCACCCATATAACCTGTAATGCTCACACAA
GCTATGAAATGAGTCTGCTCACACGAG
Done.