Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008075.1 Kokia drynarioides strain JFW-HI SEQ_122731, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9237
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:1582 original size:21 final size:21

Alignment explanation


    Indices: 1558--1598  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1548 TAACATAATC

                *                
       1558 CAAATATAAAATTTAGAAATT
          1 CAAACATAAAATTTAGAAATT

                      *    *    
       1579 CAAACATAAAGTTTATAAAT
          1 CAAACATAAAATTTAGAAAT

       1599 CTAAATTACA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32


Consensus pattern (21 bp):   
CAAACATAAAATTTAGAAATT
Done.