Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008080.1 Kokia drynarioides strain JFW-HI SEQ_122736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:706 original size:20 final size:20

Alignment explanation


    Indices: 683--743  Score: 51
    Period size: 20  Copynumber: 3.2  Consensus size: 20

        673 AATTAAAATA

                                
        683 TTAAAAATATAATTTGAAAC
          1 TTAAAAATATAATTTGAAAC

                            *    *
        703 TT---AAT-TGAA-TTAAAATA
          1 TTAAAAATAT-AATTTGAAA-C

                                
        720 TTAAAAATATAATTTGAAAC
          1 TTAAAAATATAATTTGAAAC

                
        740 TTAA
          1 TTAA

        744 TTTTTTTACC


Statistics
Matches: 30,  Mismatches: 4, Indels: 14
        0.62            0.08        0.29

Matches are distributed among these distances:
  16    6  0.20
  17    7  0.23
  20   11  0.37
  21    6  0.20

ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38


Consensus pattern (20 bp):   
TTAAAAATATAATTTGAAAC

Found at i:716 original size:37 final size:37

Alignment explanation


    Indices: 672--745  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        662 TTACAGTCTC

                                                 
        672 GAATTAAAATATTAAAAATATAATTTGAAACTTAATT
          1 GAATTAAAATATTAAAAATATAATTTGAAACTTAATT

                                                 
        709 GAATTAAAATATTAAAAATATAATTTGAAACTTAATT
          1 GAATTAAAATATTAAAAATATAATTTGAAACTTAATT

        746 TTTTTACCCA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38


Consensus pattern (37 bp):   
GAATTAAAATATTAAAAATATAATTTGAAACTTAATT
Done.