Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008084.1 Kokia drynarioides strain JFW-HI SEQ_122740, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 29552
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34

Warning! 54 characters in sequence are not A, C, G, or T


Found at i:7935 original size:22 final size:23

Alignment explanation


    Indices: 7907--7958  Score: 79
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       7897 GAACTTTTAA

                    *              
       7907 CAAAGAAGCTGACGTG-AAAATG
          1 CAAAGAAGATGACGTGAAAAATG

                        *          
       7929 CAAAGAAGATGATGTGAAAAATG
          1 CAAAGAAGATGACGTGAAAAATG

                   
       7952 CAAAGAA
          1 CAAAGAA

       7959 AAGAAGAAGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  22   14  0.52
  23   13  0.48

ACGTcount: A:0.52, C:0.10, G:0.25, T:0.13


Consensus pattern (23 bp):   
CAAAGAAGATGACGTGAAAAATG

Found at i:8360 original size:2 final size:2

Alignment explanation


    Indices: 8353--8382  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       8343 ACTGTAATGA

                                                        
       8353 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

       8383 ACACACTTAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Done.