Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008087.1 Kokia drynarioides strain JFW-HI SEQ_122743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5116
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1947 original size:14 final size:14

Alignment explanation


    Indices: 1924--1968  Score: 83
    Period size: 14  Copynumber: 3.3  Consensus size: 14

       1914 ATCCACTTTA

                          
       1924 AAATCT-AAAAGAT
          1 AAATCTAAAAAGAT

                          
       1937 AAATCTAAAAAGAT
          1 AAATCTAAAAAGAT

                          
       1951 AAATCTAAAAAGAT
          1 AAATCTAAAAAGAT

                
       1965 AAAT
          1 AAAT

       1969 ACAAATTAAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  13    6  0.19
  14   25  0.81

ACGTcount: A:0.64, C:0.07, G:0.07, T:0.22


Consensus pattern (14 bp):   
AAATCTAAAAAGAT
Done.