Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008090.1 Kokia drynarioides strain JFW-HI SEQ_122746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2303
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28


Found at i:620 original size:16 final size:16

Alignment explanation


    Indices: 579--623  Score: 56
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        569 GAGATGCCTA

                          * 
        579 AGAAGAAAGAAAAAGG
          1 AGAAGAAAGAAAAAAG

                             
        595 A-AATGAAAGAAAAAAG
          1 AGAA-GAAAGAAAAAAG

                 *       
        611 AGAAGCAAGAAAA
          1 AGAAGAAAGAAAA

        624 TGCGCCCACA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  15    2  0.08
  16   21  0.84
  17    2  0.08

ACGTcount: A:0.71, C:0.02, G:0.24, T:0.02


Consensus pattern (16 bp):   
AGAAGAAAGAAAAAAG
Done.