Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008093.1 Kokia drynarioides strain JFW-HI SEQ_122751, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3763
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:2295 original size:38 final size:38

Alignment explanation


    Indices: 2240--2317  Score: 147
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       2230 ATACATACAA

                                                  
       2240 GTCTCTGGTATTATAGTTGTGGACATACTGACTTACTT
          1 GTCTCTGGTATTATAGTTGTGGACATACTGACTTACTT

                        *                         
       2278 GTCTCTGGTATTGTAGTTGTGGACATACTGACTTACTT
          1 GTCTCTGGTATTATAGTTGTGGACATACTGACTTACTT

              
       2316 GT
          1 GT

       2318 GATACAACTT


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  38   39  1.00

ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42


Consensus pattern (38 bp):   
GTCTCTGGTATTATAGTTGTGGACATACTGACTTACTT
Done.