Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008105.1 Kokia drynarioides strain JFW-HI SEQ_122763, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 983

Length: 1639
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:287 original size:29 final size:29

Alignment explanation


    Indices: 255--311  Score: 78
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        245 TTGTTTCGGA

                          * *            
        255 TTATATTCTAATTATTTATGTTTGAAATT
          1 TTATATTCTAATTACTCATGTTTGAAATT

                   *     *              
        284 TTATATTTTAATTGCTCATGTTTGAAAT
          1 TTATATTCTAATTACTCATGTTTGAAAT

        312 CTGCAGTGTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  29   24  1.00

ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56


Consensus pattern (29 bp):   
TTATATTCTAATTACTCATGTTTGAAATT
Done.