Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008106.1 Kokia drynarioides strain JFW-HI SEQ_122764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:393 original size:36 final size:36

Alignment explanation


    Indices: 353--440  Score: 133
    Period size: 36  Copynumber: 2.4  Consensus size: 36

        343 TCCAATGACT

                  *                              
        353 AATGAAAAGACATG-CACTTTCATCTACTCAAAAACA
          1 AATGAAGAGACATGTC-CTTTCATCTACTCAAAAACA

                                            **  
        389 AATGAAGAGACATGTCCTTTCATCTACTCAAAGGCA
          1 AATGAAGAGACATGTCCTTTCATCTACTCAAAAACA

                            
        425 AATGAAGAGACATGTC
          1 AATGAAGAGACATGTC

        441 TTTTGAGCTA


Statistics
Matches: 48,  Mismatches: 3, Indels: 2
        0.91            0.06        0.04

Matches are distributed among these distances:
  36   47  0.98
  37    1  0.02

ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23


Consensus pattern (36 bp):   
AATGAAGAGACATGTCCTTTCATCTACTCAAAAACA
Done.