Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008110.1 Kokia drynarioides strain JFW-HI SEQ_122768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1326
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38


Found at i:1042 original size:3 final size:3

Alignment explanation


    Indices: 1034--1089  Score: 112
    Period size: 3  Copynumber: 18.7  Consensus size: 3

       1024 GTTTACCTGC

                                                                           
       1034 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                      
       1082 TTA TTA TT
          1 TTA TTA TT

       1090 TTGCTTTGAT


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   53  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.