Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008118.1 Kokia drynarioides strain JFW-HI SEQ_122776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1428
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36


Found at i:128 original size:19 final size:19

Alignment explanation


    Indices: 104--150  Score: 58
    Period size: 19  Copynumber: 2.5  Consensus size: 19

         94 AAAAAAAAGG

                   *          *
        104 TTAATTTTATGAGGTGGAC
          1 TTAATTTAATGAGGTGGAA

                  *     *      
        123 TTAATTAAATGATGTGGAA
          1 TTAATTTAATGAGGTGGAA

                     
        142 TTAATTTAA
          1 TTAATTTAA

        151 GATATGACGT


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  19   23  1.00

ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43


Consensus pattern (19 bp):   
TTAATTTAATGAGGTGGAA
Done.