Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008131.1 Kokia drynarioides strain JFW-HI SEQ_122789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11321
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:11231 original size:40 final size:40

Alignment explanation


    Indices: 11182--11261  Score: 99
    Period size: 40  Copynumber: 2.0  Consensus size: 40

      11172 TATTATTTGT

                            *                        
      11182 TATTAATATTAAGTAATTAA-AAATATTTATATTAATATTA
          1 TATTAATATTAA-TAAATAATAAATATTTATATTAATATTA

                *                *  *        *      
      11222 TATTTATATTAATAAATAATATATTTTTATATTTATATTA
          1 TATTAATATTAATAAATAATAAATATTTATATTAATATTA

      11262 ATATATTTCG


Statistics
Matches: 34,  Mismatches: 5, Indels: 2
        0.83            0.12        0.05

Matches are distributed among these distances:
  39    6  0.18
  40   28  0.82

ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53


Consensus pattern (40 bp):   
TATTAATATTAATAAATAATAAATATTTATATTAATATTA
Done.