Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008142.1 Kokia drynarioides strain JFW-HI SEQ_122800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3557
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:781 original size:24 final size:23

Alignment explanation


    Indices: 748--804  Score: 69
    Period size: 24  Copynumber: 2.4  Consensus size: 23

        738 TTATCCAAAG

                                     
        748 AAAAGAAAAACAAGTAAAAAGATCA
          1 AAAAG-AAAACAAGTAAAAAGA-CA

                     **        *   
        773 AAAAGAAAATGAGTAAAAATACA
          1 AAAAGAAAACAAGTAAAAAGACA

                     
        796 AAAAGAAAA
          1 AAAAGAAAA

        805 GAGTAAGAAA


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  23   11  0.38
  24   13  0.45
  25    5  0.17

ACGTcount: A:0.74, C:0.05, G:0.12, T:0.09


Consensus pattern (23 bp):   
AAAAGAAAACAAGTAAAAAGACA

Found at i:808 original size:22 final size:24

Alignment explanation


    Indices: 760--810  Score: 79
    Period size: 23  Copynumber: 2.2  Consensus size: 24

        750 AAGAAAAACA

                                    
        760 AGTAAAAAGATCAAAAAGAAAATG
          1 AGTAAAAAGATCAAAAAGAAAATG

                    *               
        784 AGTAAAAATA-CAAAAAGAAAA-G
          1 AGTAAAAAGATCAAAAAGAAAATG

                 
        806 AGTAA
          1 AGTAA

        811 GAAAAATTGT


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  22    6  0.23
  23   11  0.42
  24    9  0.35

ACGTcount: A:0.69, C:0.04, G:0.16, T:0.12


Consensus pattern (24 bp):   
AGTAAAAAGATCAAAAAGAAAATG
Done.