Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008144.1 Kokia drynarioides strain JFW-HI SEQ_122802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3883
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:3017 original size:6 final size:7

Alignment explanation


    Indices: 3000--3024  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       2990 GAAGAGCCAA

                   
       3000 AAAAAAG
          1 AAAAAAG

                   
       3007 AAAAAAG
          1 AAAAAAG

                   
       3014 AAAAAAG
          1 AAAAAAG

                
       3021 AAAA
          1 AAAA

       3025 GAATACCCAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (7 bp):   
AAAAAAG
Done.