Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008152.1 Kokia drynarioides strain JFW-HI SEQ_122811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29


Found at i:625 original size:33 final size:33

Alignment explanation


    Indices: 588--655  Score: 111
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        578 GCAAATTACT

                                              
        588 CATCACTATCA-AACCACAAACAAACATTTAATA
          1 CATCACTATCAGAA-CACAAACAAACATTTAATA

                                   *         
        621 CATCACTATCAGAACACAAACAAGCATTTAATA
          1 CATCACTATCAGAACACAAACAAACATTTAATA

              
        654 CA
          1 CA

        656 ACATAGGTAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 2
        0.92            0.03        0.06

Matches are distributed among these distances:
  33   31  0.94
  34    2  0.06

ACGTcount: A:0.50, C:0.26, G:0.03, T:0.21


Consensus pattern (33 bp):   
CATCACTATCAGAACACAAACAAACATTTAATA

Found at i:1013 original size:11 final size:11

Alignment explanation


    Indices: 997--1023  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        987 TGCATGTCAA

                       
        997 ATATAGAGCAT
          1 ATATAGAGCAT

                       
       1008 ATATAGAGCAT
          1 ATATAGAGCAT

                 
       1019 ATATA
          1 ATATA

       1024 TAAACAAACT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30


Consensus pattern (11 bp):   
ATATAGAGCAT
Done.