Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008153.1 Kokia drynarioides strain JFW-HI SEQ_122812, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1453
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30


Found at i:625 original size:33 final size:33

Alignment explanation


    Indices: 587--654  Score: 118
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        577 ACAAATTACT

                         *                   
        587 CATCACTATCAGACCACAAACAAACATTTAATA
          1 CATCACTATCAGAACACAAACAAACATTTAATA

                                   *         
        620 CATCACTATCAGAACACAAACAAGCATTTAATA
          1 CATCACTATCAGAACACAAACAAACATTTAATA

              
        653 CA
          1 CA

        655 ACATAGGTAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.49, C:0.26, G:0.04, T:0.21


Consensus pattern (33 bp):   
CATCACTATCAGAACACAAACAAACATTTAATA

Found at i:1062 original size:79 final size:79

Alignment explanation


    Indices: 975--1131  Score: 251
    Period size: 79  Copynumber: 2.0  Consensus size: 79

        965 ATAAACAATC

                       *                *                                    
        975 ATATATATAGTTGCATGTCAAATATAGAGCATATATATAAACAAACTATAATACTTGAATATATA
          1 ATATATATA-TAGC-TGTCAAATATAGAACATATATATAAACAAACTATAATACTTGAATATATA

                            
       1040 TAGAGCATATATATAT
         64 TAGAGCATATATATAT

                       *                                   **                
       1056 ATATATATATATCTGTCAAATATAGAACATATATATAAACAAACTATGGTACTTGAATATATATA
          1 ATATATATATAGCTGTCAAATATAGAACATATATATAAACAAACTATAATACTTGAATATATATA

                       
       1121 GAGCATATATA
         66 GAGCATATATA

       1132 CAGCTATCAA


Statistics
Matches: 71,  Mismatches: 5, Indels: 2
        0.91            0.06        0.03

Matches are distributed among these distances:
  79   60  0.85
  80    2  0.03
  81    9  0.13

ACGTcount: A:0.47, C:0.09, G:0.10, T:0.34


Consensus pattern (79 bp):   
ATATATATATAGCTGTCAAATATAGAACATATATATAAACAAACTATAATACTTGAATATATATA
GAGCATATATATAT
Done.