Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008155.1 Kokia drynarioides strain JFW-HI SEQ_122814, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3698
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:102 original size:2 final size:2

Alignment explanation


    Indices: 97--121  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

         87 GTATATTTTT

                                                 
         97 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

        122 TGACTTTAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:3648 original size:25 final size:24

Alignment explanation


    Indices: 3596--3653  Score: 64
    Period size: 25  Copynumber: 2.4  Consensus size: 24

       3586 TTAATATATG

                      *          * *
       3596 AAATATTAATTTTAAATATTTTTT
          1 AAATATTAATATTAAATATTTATA

                            *        
       3620 AAATAATTAATATTAATTATTTATA
          1 AAAT-ATTAATATTAAATATTTATA

                      
       3645 AAAT-TTAAT
          1 AAATATTAAT

       3654 TAGAATATAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 3
        0.81            0.11        0.08

Matches are distributed among these distances:
  23    5  0.17
  24    4  0.14
  25   20  0.69

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (24 bp):   
AAATATTAATATTAAATATTTATA
Done.