Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008156.1 Kokia drynarioides strain JFW-HI SEQ_122815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9601
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:3043 original size:19 final size:19

Alignment explanation


    Indices: 3021--3058  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3011 TTAATAAATT

                               
       3021 TTAAAAAAATTATGATTTA
          1 TTAAAAAAATTATGATTTA

                *        *     
       3040 TTAATAAAATTATTATTTA
          1 TTAAAAAAATTATGATTTA

       3059 GTCAAATTTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (19 bp):   
TTAAAAAAATTATGATTTA

Found at i:3814 original size:18 final size:17

Alignment explanation


    Indices: 3791--3832  Score: 66
    Period size: 18  Copynumber: 2.4  Consensus size: 17

       3781 CAATTAGTCC

                   *          
       3791 AAAAAGTTTTTTTCTACA
          1 AAAAAGTATTTTTCTA-A

                             
       3809 AAAAAGTATTTTTCTAA
          1 AAAAAGTATTTTTCTAA

                   
       3826 AAAAAGT
          1 AAAAAGT

       3833 CTATTCCAAC


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  17    8  0.35
  18   15  0.65

ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38


Consensus pattern (17 bp):   
AAAAAGTATTTTTCTAA
Done.