Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008164.1 Kokia drynarioides strain JFW-HI SEQ_122823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11629
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:8033 original size:21 final size:22

Alignment explanation


    Indices: 8004--8046  Score: 63
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       7994 AAATAATAAC

                                   
       8004 GAAACAG-AATAACTAAAACCTA
          1 GAAACAGAAATAAC-AAAACCTA

                                  
       8026 GAAA-AGAAATAACAAAACCTA
          1 GAAACAGAAATAACAAAACCTA

       8047 AATAATGAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  21   10  0.50
  22   10  0.50

ACGTcount: A:0.63, C:0.16, G:0.09, T:0.12


Consensus pattern (22 bp):   
GAAACAGAAATAACAAAACCTA
Done.