Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008169.1 Kokia drynarioides strain JFW-HI SEQ_122828, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5138
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:4233 original size:28 final size:27

Alignment explanation


    Indices: 4202--4266  Score: 64
    Period size: 28  Copynumber: 2.3  Consensus size: 27

       4192 TTTTATATTA

                                          
       4202 ATTAATAAAATATAATAAA-ACTATTTAT-
          1 ATTAATAAAAT-TAA-AAATA-TATTTATG

                                         
       4230 ATTAAATAACAATTAAAAATATATTTATG
          1 ATT-AATAA-AATTAAAAATATATTTATG

                     
       4259 A-TAATAAA
          1 ATTAATAAA

       4267 TTTACATGTA


Statistics
Matches: 33,  Mismatches: 0, Indels: 10
        0.77            0.00        0.23

Matches are distributed among these distances:
  26    1  0.03
  27    5  0.15
  28   14  0.42
  29   10  0.30
  30    3  0.09

ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37


Consensus pattern (27 bp):   
ATTAATAAAATTAAAAATATATTTATG
Done.