Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008188.1 Kokia drynarioides strain JFW-HI SEQ_122847, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3683
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:636 original size:16 final size:16

Alignment explanation


    Indices: 589--638  Score: 59
    Period size: 15  Copynumber: 3.1  Consensus size: 16

        579 AAGGATATAC

                             
        589 ATATTGAATTATTTTT-
          1 ATATT-AATTATTTTTA

                  *         
        605 ATATTATTTATTTTTA
          1 ATATTAATTATTTTTA

                             
        621 ATA-TAATTATTCTTTA
          1 ATATTAATTATT-TTTA

              
        637 AT
          1 AT

        639 CCATAAAAAT


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  15   16  0.53
  16   14  0.47

ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62


Consensus pattern (16 bp):   
ATATTAATTATTTTTA

Done.