Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000819.1 Kokia drynarioides strain JFW-HI SEQ_111910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2794
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31


Found at i:2224 original size:14 final size:14

Alignment explanation


    Indices: 2205--2233  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2195 TCATATTGAC

                          
       2205 TTAGTCACATTATG
          1 TTAGTCACATTATG

                          
       2219 TTAGTCACATTATG
          1 TTAGTCACATTATG

             
       2233 T
          1 T

       2234 GGACAAGATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45


Consensus pattern (14 bp):   
TTAGTCACATTATG
Done.