Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008192.1 Kokia drynarioides strain JFW-HI SEQ_122851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3317
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37


Found at i:2554 original size:11 final size:12

Alignment explanation


    Indices: 2539--2579  Score: 50
    Period size: 11  Copynumber: 3.4  Consensus size: 12

       2529 AAAATGATTA

                        
       2539 AATATTAAAAA-
          1 AATATTAAAAAT

                          
       2550 AATATTTACAAAAT
          1 AATA-TTA-AAAAT

                        
       2564 AAT-TTAAAAAT
          1 AATATTAAAAAT

                 
       2575 AATAT
          1 AATAT

       2580 GGATGGGCCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 7
        0.79            0.00        0.21

Matches are distributed among these distances:
  11   12  0.46
  12    7  0.27
  13    4  0.15
  14    3  0.12

ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34


Consensus pattern (12 bp):   
AATATTAAAAAT
Done.