Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008194.1 Kokia drynarioides strain JFW-HI SEQ_122854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2757
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34


Found at i:2123 original size:24 final size:24

Alignment explanation


    Indices: 2092--2143  Score: 95
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2082 AAAAATAAAT

                                    
       2092 AGTTTAATTGAAACAAATAAACAA
          1 AGTTTAATTGAAACAAATAAACAA

                            *       
       2116 AGTTTAATTGAAACAATTAAACAA
          1 AGTTTAATTGAAACAAATAAACAA

                
       2140 AGTT
          1 AGTT

       2144 CAAGTCAAAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.54, C:0.08, G:0.10, T:0.29


Consensus pattern (24 bp):   
AGTTTAATTGAAACAAATAAACAA
Done.