Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000820.1 Kokia drynarioides strain JFW-HI SEQ_111911, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 909

Length: 1516
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33


Found at i:922 original size:17 final size:17

Alignment explanation


    Indices: 878--913  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        868 TAAACCTCTA

                             
        878 CCTCAACCCCACCAAAC
          1 CCTCAACCCCACCAAAC

                             
        895 CCTCAACCCCACCAAAC
          1 CCTCAACCCCACCAAAC

              
        912 CC
          1 CC

        914 CACCTCCCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.33, C:0.61, G:0.00, T:0.06


Consensus pattern (17 bp):   
CCTCAACCCCACCAAAC
Done.