Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008208.1 Kokia drynarioides strain JFW-HI SEQ_122870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2125
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35


Found at i:356 original size:24 final size:24

Alignment explanation


    Indices: 324--383  Score: 77
    Period size: 23  Copynumber: 2.5  Consensus size: 24

        314 AAAACCCAAT

                *       *           
        324 AAATGCTATTTTGTATTTAAATTC
          1 AAATCCTATTTTCTATTTAAATTC

                                    
        348 AAATCCTA-TTTCTATTTAAATTC
          1 AAATCCTATTTTCTATTTAAATTC

                         
        371 AACACTCCTATTT
          1 AA-A-TCCTATTT

        384 ATATTTGGAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  23   16  0.52
  24    8  0.26
  25    5  0.16
  26    2  0.06

ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47


Consensus pattern (24 bp):   
AAATCCTATTTTCTATTTAAATTC

Found at i:367 original size:23 final size:25

Alignment explanation


    Indices: 337--389  Score: 83
    Period size: 23  Copynumber: 2.2  Consensus size: 25

        327 TGCTATTTTG

                                    *
        337 TATTTAAATTCAA-A-TCCTATTTC
          1 TATTTAAATTCAACACTCCTATTTA

                                     
        360 TATTTAAATTCAACACTCCTATTTA
          1 TATTTAAATTCAACACTCCTATTTA

                 
        385 TATTT
          1 TATTT

        390 GGATTAATTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  23   13  0.48
  24    1  0.04
  25   13  0.48

ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49


Consensus pattern (25 bp):   
TATTTAAATTCAACACTCCTATTTA

Done.