Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008215.1 Kokia drynarioides strain JFW-HI SEQ_122879, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4748
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35


Found at i:2903 original size:23 final size:21

Alignment explanation


    Indices: 2869--2916  Score: 53
    Period size: 23  Copynumber: 2.2  Consensus size: 21

       2859 ATTCGACTCC

                                  
       2869 AATTTATATCAAATAATTCAAA
          1 AATTTATATCAAATAATT-AAA

                          *        
       2891 TAATTTA-ATTCAAGTAATTAAA
          1 -AATTTATA-TCAAATAATTAAA

                
       2913 AATT
          1 AATT

       2917 CAAAATATTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  21    4  0.17
  22    4  0.17
  23   15  0.65

ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40


Consensus pattern (21 bp):   
AATTTATATCAAATAATTAAA
Done.