Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008218.1 Kokia drynarioides strain JFW-HI SEQ_122882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6719
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:1666 original size:9 final size:10

Alignment explanation


    Indices: 1626--1670  Score: 56
    Period size: 10  Copynumber: 4.5  Consensus size: 10

       1616 TTTAACACAA

                       
       1626 CACATATTAAT
          1 CACAT-TTAAT

                    * 
       1637 CACATTTAGT
          1 CACATTTAAT

                      
       1647 CACATTTAAT
          1 CACATTTAAT

              *       
       1657 CATA-TTAAT
          1 CACATTTAAT

                 
       1666 CACAT
          1 CACAT

       1671 GAATATTTCA


Statistics
Matches: 29,  Mismatches: 4, Indels: 3
        0.81            0.11        0.08

Matches are distributed among these distances:
   9    8  0.28
  10   16  0.55
  11    5  0.17

ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38


Consensus pattern (10 bp):   
CACATTTAAT
Done.