Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008222.1 Kokia drynarioides strain JFW-HI SEQ_122886, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10372
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35


Found at i:3384 original size:31 final size:30

Alignment explanation


    Indices: 3349--3406  Score: 82
    Period size: 31  Copynumber: 1.9  Consensus size: 30

       3339 GTTTCAAAAT

                  *                         
       3349 AATTATTGAATTATTTAAAAATT-TTATTTTA
          1 AATTATCGAATTA-TT-AAAATTATTATTTTA

                                       
       3380 AATTATCGAATTATTAAAATTATTATT
          1 AATTATCGAATTATTAAAATTATTATT

       3407 GTATAATTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  29    6  0.24
  30    7  0.28
  31   12  0.48

ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52


Consensus pattern (30 bp):   
AATTATCGAATTATTAAAATTATTATTTTA

Found at i:7599 original size:18 final size:19

Alignment explanation


    Indices: 7558--7593  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       7548 ATTTTGGGTT

                               
       7558 AATAATATATATTAAATAC
          1 AATAATATATATTAAATAC

                              
       7577 AATAATATA-ATTAAATA
          1 AATAATATATATTAAATA

       7594 ATATAAAATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36


Consensus pattern (19 bp):   
AATAATATATATTAAATAC
Done.