Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008227.1 Kokia drynarioides strain JFW-HI SEQ_122891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2880
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35


Found at i:841 original size:32 final size:30

Alignment explanation


    Indices: 794--860  Score: 80
    Period size: 32  Copynumber: 2.2  Consensus size: 30

        784 ATTTATCACA

                  *          *              
        794 ATAATTTTTTAAAAAAATTAATTATCACAATT
          1 ATAATTATTTAAAAAAAAT-A-TATCACAATT

                      *                   
        826 ATAATTATTTCAAAAAAATATATCACAATT
          1 ATAATTATTTAAAAAAAATATATCACAATT

            *    
        856 TTAAT
          1 ATAAT

        861 CCCTCCTCTT


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  30   14  0.45
  31    1  0.03
  32   16  0.52

ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42


Consensus pattern (30 bp):   
ATAATTATTTAAAAAAAATATATCACAATT

Found at i:852 original size:30 final size:32

Alignment explanation


    Indices: 794--860  Score: 86
    Period size: 30  Copynumber: 2.2  Consensus size: 32

        784 ATTTATCACA

                     *                      
        794 ATAATTTTTTAAAAAAATTAATTATCACAATT
          1 ATAATTTTTCAAAAAAATTAATTATCACAATT

                                             
        826 ATAATTATTTCAAAAAAA-T-A-TATCACAATT
          1 ATAATT-TTTCAAAAAAATTAATTATCACAATT

            *    
        856 TTAAT
          1 ATAAT

        861 CCCTCCTCTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  30   14  0.44
  31    1  0.03
  32    7  0.22
  33   10  0.31

ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42


Consensus pattern (32 bp):   
ATAATTTTTCAAAAAAATTAATTATCACAATT
Done.