Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008229.1 Kokia drynarioides strain JFW-HI SEQ_122893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5191
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.35

Warning! 45 characters in sequence are not A, C, G, or T


Found at i:2324 original size:12 final size:12

Alignment explanation


    Indices: 2307--2334  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       2297 TTTTTATTTT

                        
       2307 TTTCTTTTTGGA
          1 TTTCTTTTTGGA

                        
       2319 TTTCTTTTTGGA
          1 TTTCTTTTTGGA

                
       2331 TTTC
          1 TTTC

       2335 ATATTTTTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.07, C:0.11, G:0.14, T:0.68


Consensus pattern (12 bp):   
TTTCTTTTTGGA
Done.