Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008230.1 Kokia drynarioides strain JFW-HI SEQ_122894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4172
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36


Found at i:304 original size:24 final size:23

Alignment explanation


    Indices: 276--321  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        266 TTACGAACAA

                                    
        276 GCTTGTTTAAAAGCTCATTTATTG
          1 GCTTGTTTAAAA-CTCATTTATTG

                     **           
        300 GCTTGTTTATGACTCATTTATT
          1 GCTTGTTTAAAACTCATTTATT

        322 TATTAAAGAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  23   10  0.50
  24   10  0.50

ACGTcount: A:0.22, C:0.13, G:0.15, T:0.50


Consensus pattern (23 bp):   
GCTTGTTTAAAACTCATTTATTG

Found at i:2380 original size:3 final size:3

Alignment explanation


    Indices: 2372--2400  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       2362 AAGAAGTCTT

                                                  
       2372 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       2401 CTCTAAAGAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTA

Done.