Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008234.1 Kokia drynarioides strain JFW-HI SEQ_122898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4822
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32


Found at i:3084 original size:20 final size:20

Alignment explanation


    Indices: 3052--3115  Score: 78
    Period size: 20  Copynumber: 3.2  Consensus size: 20

       3042 ATTGACGGTT

                                 
       3052 TAATCTATT-TTTTTTTTTTA
          1 TAAT-TATTATTTTTTTTTTA

                                
       3072 TAATTATTATTTTTTTTTTA
          1 TAATTATTATTTTTTTTTTA

            *      *     *      
       3092 AAATTA-AATTTTGTTTTTA
          1 TAATTATTATTTTTTTTTTA

                 
       3111 TAATT
          1 TAATT

       3116 GATTGGACTC


Statistics
Matches: 39,  Mismatches: 4, Indels: 3
        0.85            0.09        0.07

Matches are distributed among these distances:
  19   19  0.49
  20   20  0.51

ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69


Consensus pattern (20 bp):   
TAATTATTATTTTTTTTTTA
Done.