Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008235.1 Kokia drynarioides strain JFW-HI SEQ_122899, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4209
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:2713 original size:2 final size:2

Alignment explanation


    Indices: 2708--2738  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       2698 TATATAACAC

                                                          
       2708 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       2739 AGGTTAGGTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:3987 original size:3 final size:3

Alignment explanation


    Indices: 3979--4004  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       3969 TAAACATGTA

                                              
       3979 AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AA

       4005 AATCATTTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (3 bp):   
AAT

Done.