Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008239.1 Kokia drynarioides strain JFW-HI SEQ_122903, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12893
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--27  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

                                                    
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

         28 TGGGATCATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:9342 original size:15 final size:15

Alignment explanation


    Indices: 9322--9353  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       9312 GAACAATAAG

                           
       9322 ACAAATATAAATGAT
          1 ACAAATATAAATGAT

                    *      
       9337 ACAAATATGAATGAT
          1 ACAAATATAAATGAT

              
       9352 AC
          1 AC

       9354 TTAAATTGTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.56, C:0.09, G:0.09, T:0.25


Consensus pattern (15 bp):   
ACAAATATAAATGAT
Done.