Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000824.1 Kokia drynarioides strain JFW-HI SEQ_111917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34


Found at i:305 original size:15 final size:15

Alignment explanation


    Indices: 285--315  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        275 TTGTATCAGT

                           
        285 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
        300 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
        315 A
          1 A

        316 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC
Done.