Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008249.1 Kokia drynarioides strain JFW-HI SEQ_122914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7137
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:244 original size:16 final size:15

Alignment explanation


    Indices: 206--252  Score: 58
    Period size: 16  Copynumber: 3.0  Consensus size: 15

        196 CATAGAATCT

                       * * 
        206 AAAAAGAAATAGATA
          1 AAAAAGAAATAAACA

                             
        221 AAAGAAGAAATAAAGCA
          1 AAA-AAGAAATAAA-CA

                           
        238 AAAAAGAAATAAACA
          1 AAAAAGAAATAAACA

        253 TAAATGTAAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  15    5  0.18
  16   19  0.68
  17    4  0.14

ACGTcount: A:0.74, C:0.04, G:0.13, T:0.09


Consensus pattern (15 bp):   
AAAAAGAAATAAACA
Done.