Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008251.1 Kokia drynarioides strain JFW-HI SEQ_122916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4734
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:3153 original size:13 final size:15

Alignment explanation


    Indices: 3127--3158  Score: 50
    Period size: 13  Copynumber: 2.3  Consensus size: 15

       3117 TTGCTTTCCA

                           
       3127 TTTTCGTTCTTCTTT
          1 TTTTCGTTCTTCTTT

                           
       3142 TTTTC-TTC-TCTTT
          1 TTTTCGTTCTTCTTT

                
       3155 TTTT
          1 TTTT

       3159 TATCAAACCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  13    9  0.53
  14    3  0.18
  15    5  0.29

ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78


Consensus pattern (15 bp):   
TTTTCGTTCTTCTTT
Done.