Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008253.1 Kokia drynarioides strain JFW-HI SEQ_122918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1755
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29


Found at i:1713 original size:13 final size:14

Alignment explanation


    Indices: 1690--1727  Score: 51
    Period size: 14  Copynumber: 2.7  Consensus size: 14

       1680 GGATGCACTT

                           
       1690 TAAACTCTAAAAA-A
          1 TAAA-TCTAAAAAGA

                          
       1704 TAAATCTAAAAAGA
          1 TAAATCTAAAAAGA

                 *    
       1718 TAAATATAAA
          1 TAAATCTAAA

       1728 TTAAATACAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13    8  0.36
  14   14  0.64

ACGTcount: A:0.66, C:0.08, G:0.03, T:0.24


Consensus pattern (14 bp):   
TAAATCTAAAAAGA

Found at i:1732 original size:11 final size:11

Alignment explanation


    Indices: 1718--1750  Score: 57
    Period size: 11  Copynumber: 3.0  Consensus size: 11

       1708 TCTAAAAAGA

                       
       1718 TAAATATAAAT
          1 TAAATATAAAT

                  *    
       1729 TAAATACAAAT
          1 TAAATATAAAT

                       
       1740 TAAATATAAAT
          1 TAAATATAAAT

       1751 AATAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33


Consensus pattern (11 bp):   
TAAATATAAAT
Done.