Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008257.1 Kokia drynarioides strain JFW-HI SEQ_122922, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17220
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34


Found at i:4379 original size:16 final size:16

Alignment explanation


    Indices: 4358--4388  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       4348 TTATGATTAA

                            
       4358 TTATATTAATTTTATT
          1 TTATATTAATTTTATT

                    *      
       4374 TTATATTATTTTTAT
          1 TTATATTAATTTTAT

       4389 GAGTTTTAAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71


Consensus pattern (16 bp):   
TTATATTAATTTTATT

Found at i:8493 original size:13 final size:13

Alignment explanation


    Indices: 8475--8499  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       8465 CACGCTCAAG

                         
       8475 AAATTGTTGACCA
          1 AAATTGTTGACCA

                        
       8488 AAATTGTTGACC
          1 AAATTGTTGACC

       8500 GAGGCTCTAG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Consensus pattern (13 bp):   
AAATTGTTGACCA
Done.