Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008261.1 Kokia drynarioides strain JFW-HI SEQ_122926, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8666
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:4294 original size:30 final size:26

Alignment explanation


    Indices: 4262--4314  Score: 70
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       4252 ATTACATTTA

                                         
       4262 AAAATAATAAAAAATCAATTTAATTTTTT
          1 AAAATAAT-AAAAAT--ATTTAATTTTTT

                 *                  
       4291 AAAATTATAAAAATATTTAATTTT
          1 AAAATAATAAAAATATTTAATTTT

       4315 GGCTCCCTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  26   10  0.43
  28    6  0.26
  29    7  0.30

ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43


Consensus pattern (26 bp):   
AAAATAATAAAAATATTTAATTTTTT

Found at i:6430 original size:72 final size:72

Alignment explanation


    Indices: 6321--6460  Score: 244
    Period size: 72  Copynumber: 1.9  Consensus size: 72

       6311 TCCAAACTTG

                                     *                                       
       6321 ACATACTCCCCATCCACCTTGGTATGTCCCCAGAAAGCTCGTTCTTGCTTAAATCCAATGTTGAC
          1 ACATACTCCCCATCCACCTTGGTATCTCCCCAGAAAGCTCGTTCTTGCTTAAATCCAATGTTGAC

                   
       6386 AAACTCA
         66 AAACTCA

                 *  *                   *                                    
       6393 ACATATTCTCCATCCACCTTGGTATCTCTCCAGAAAGCTCGTTCTTGCTTAAATCCAATGTTGAC
          1 ACATACTCCCCATCCACCTTGGTATCTCCCCAGAAAGCTCGTTCTTGCTTAAATCCAATGTTGAC

               
       6458 AAA
         66 AAA

       6461 AAGGAGCAAT


Statistics
Matches: 64,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  72   64  1.00

ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30


Consensus pattern (72 bp):   
ACATACTCCCCATCCACCTTGGTATCTCCCCAGAAAGCTCGTTCTTGCTTAAATCCAATGTTGAC
AAACTCA
Done.