Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008263.1 Kokia drynarioides strain JFW-HI SEQ_122928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23271
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35

Warning! 84 characters in sequence are not A, C, G, or T


Found at i:2147 original size:72 final size:72

Alignment explanation


    Indices: 2061--2200  Score: 244
    Period size: 72  Copynumber: 1.9  Consensus size: 72

       2051 ATTGCTCCTT

                                                      *                      
       2061 TTTGTCAACATTGGATTTAAGCAAGAACGAGCTTTCTGGAGAGATACCAAGGTGGATGGAGAATA
          1 TTTGTCAACATTGGATTTAAGCAAGAACGAGCTTTCTGGAGACATACCAAGGTGGATGGAGAATA

                   
       2126 TGTTGAG
         66 TGTTGAG

                                                   *                   *  *  
       2133 TTTGTCAACATTGGATTTAAGCAAGAACGAGCTTTCTGGGGACATACCAAGGTGGATGGGGAGTA
          1 TTTGTCAACATTGGATTTAAGCAAGAACGAGCTTTCTGGAGACATACCAAGGTGGATGGAGAATA

               
       2198 TGT
         66 TGT

       2201 CAAGTTTGGA


Statistics
Matches: 64,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  72   64  1.00

ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28


Consensus pattern (72 bp):   
TTTGTCAACATTGGATTTAAGCAAGAACGAGCTTTCTGGAGACATACCAAGGTGGATGGAGAATA
TGTTGAG

Done.