genome.fa.s827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000827.1 Kokia drynarioides strain JFW-HI SEQ_111921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174284

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2910--2937	5	5.6	5	100	0	56	82	0	0	17	0.68
2964--3056	49	1.9	48	88	2	141	33	7	15	44	1.74
3501--3539	2	19.5	2	100	0	78	48	0	0	51	1.00
4655--4684	12	2.6	11	90	10	51	33	26	30	10	1.89
5112--5369	30	8.7	30	72	12	131	36	22	3	37	1.71
5121--5259	60	2.3	61	80	11	171	33	22	5	38	1.76
5110--5305	90	2.2	90	79	9	213	35	20	4	39	1.72
13590--13759	93	1.8	93	97	0	322	40	14	17	28	1.89
14088--14862	49	15.7	49	75	5	562	34	15	30	18	1.93
14084--14769	99	6.9	99	82	2	788	34	15	30	19	1.93
14073--14762	297	2.3	296	86	1	972	34	15	30	19	1.93
14495--14860	99	3.7	98	79	3	254	34	16	31	16	1.92
14934--15317	209	1.8	209	88	0	588	39	16	21	23	1.92
17174--17454	57	4.8	59	78	9	245	39	19	1	39	1.61
17174--17486	30	10.7	28	77	10	206	39	20	1	38	1.61
17184--17509	59	5.6	59	77	12	236	39	20	1	38	1.61
20607--20640	17	2.0	17	88	0	50	55	14	14	14	1.69
24597--24706	56	2.0	56	98	0	211	35	22	9	32	1.86
31397--31906	23	22.2	23	87	0	662	47	12	4	34	1.63
39748--39778	16	1.9	16	93	0	53	61	0	16	22	1.34
40606--40706	38	2.7	38	81	7	100	25	15	25	32	1.96
40577--40706	37	3.6	38	77	13	105	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40690--40793	38	2.8	38	85	5	133	22	14	33	29	1.93
41415--41452	15	2.3	18	86	13	55	34	5	28	31	1.80
48923--48954	16	2.0	16	93	0	55	53	3	18	25	1.59
49580--49856	93	3.0	93	85	4	360	28	18	22	31	1.97
49580--49865	94	3.1	95	81	6	341	29	18	21	30	1.97
55003--55293	94	3.1	94	79	6	306	28	17	22	31	1.96
59690--59909	108	2.0	108	100	0	440	38	7	30	23	1.83
63654--63696	16	2.4	19	88	11	65	2	20	0	76	0.89
64330--64391	31	2.0	31	100	0	124	45	16	16	22	1.85
71735--71884	19	8.1	19	78	4	153	29	26	15	29	1.96
71747--71901	18	8.4	19	78	5	147	29	23	16	30	1.97
71738--71898	37	4.4	37	90	1	225	30	24	16	29	1.96
77576--77701	46	2.7	46	93	2	209	32	19	10	37	1.86
81484--81629	42	3.4	41	78	13	134	34	8	28	28	1.86
81484--81641	86	1.8	85	80	6	185	34	9	27	29	1.88
84112--84156	19	2.4	19	81	7	56	37	0	4	57	1.19
86538--86577	21	1.9	21	94	0	71	50	12	12	25	1.75
90538--90570	13	2.5	13	95	0	57	15	3	0	81	0.80
91343--91541	103	2.0	101	79	7	215	34	12	25	27	1.92
92096--92140	19	2.4	19	81	7	56	37	0	4	57	1.19
99344--99501	42	3.7	41	80	9	165	36	10	27	26	1.88
99717--99741	13	1.9	13	100	0	50	48	12	16	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102937--103039	29	3.7	26	74	20	84	63	2	0	33	1.16
102942--103008	28	2.4	28	83	11	84	68	2	0	28	1.04
102974--103011	20	1.9	20	84	10	51	71	0	0	28	0.87
104369--104399	8	3.9	8	100	0	62	51	0	0	48	1.00
106134--106177	23	2.0	21	83	12	54	43	18	20	18	1.89
108213--108365	77	2.0	77	100	0	306	47	11	17	23	1.81
112481--112511	14	2.1	15	94	5	55	12	6	3	77	1.08
121581--121612	16	2.0	16	100	0	64	25	25	31	18	1.98
125066--125096	14	2.1	15	94	5	55	77	3	6	12	1.08
132473--132531	25	2.4	25	94	0	100	25	20	13	40	1.89
133490--133528	19	2.1	19	95	0	69	28	5	12	53	1.60
163549--163591	16	2.6	17	79	20	56	25	27	11	34	1.91
164208--164247	18	2.2	18	86	8	55	55	0	0	45	0.99
164866--164917	18	2.7	19	82	11	54	34	3	0	61	1.14
166764--166814	26	2.0	26	84	3	68	35	3	9	50	1.54
169133--169170	19	2.0	19	89	0	58	21	18	23	36	1.95
170525--170556	12	2.7	12	90	0	55	50	34	3	12	1.56
173207--173272	32	2.1	32	85	0	87	30	15	7	46	1.73

Tables:   1

The End!